PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g55935.1.p
Common NameBRADI_2g55935
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 584aa    MW: 67321.5 Da    PI: 7.6425
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g55935.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.11.9e-2096215289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................................tekerrtraetrtg 61 
                        Yn+YA +vGFs+r s+s++s  ++e+ k+ fvC+k  k++ + +                                  + ++rr+++ + t+
  Bradi2g55935.1.p  96 HYNNYALRVGFSIRSSTSRRSLYTNEMEKQLFVCNKFRKPKADGEPtkkakvapdvssdskvgseeetdreedlpigkkAPNKRRRETIKGTN 188
                       6************************************9999988778899***************************987888999999**** PP

              FAR1  62 CkaklkvkkekdgkwevtkleleHnHel 89 
                       Cka++ vk+  d++w+v+ +  eHnH+l
  Bradi2g55935.1.p 189 CKARMIVKLL-DSRWQVIYFIAEHNHPL 215
                       **********.9**************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1896216IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDLNELPTDL VDEGVATTGF PSYCTQPAPG KEVGEEVHNE VNAGSSHNGS MHITTSIPND  60
DDDINDEQFP EDEVLSQPHE PYLGMRFDTL LCAKDHYNNY ALRVGFSIRS STSRRSLYTN  120
EMEKQLFVCN KFRKPKADGE PTKKAKVAPD VSSDSKVGSE EETDREEDLP IGKKAPNKRR  180
RETIKGTNCK ARMIVKLLDS RWQVIYFIAE HNHPLIIKPS LTKYLRSHQG IPKEEENFLR  240
ILHDSNLETG RMMQLMSSFY GSGLLIPYTT KAISNYRGWA EMMETHQVAG NKYIAWLYNI  300
RATWVPCYFR NCFFPFLQST QRSEGINVVL KCYVNPHNSI LNFVHQHEKI QLKILVKEGG  360
NDYRTDHLHV DTWSSYPIEK QALEVYTRDI YYRFRSEFEM IGRYNVRPLQ NDIYELIPNR  420
KYCCNYGTRA YKVTDRVDEA SYSCECCKFQ KDRLLCCYIL KIFTHCSIDE IPQHYILKRC  480
TQQAIREEVA PEQDQPDVMP KELEKEIRLA NMSVELQKVA RKACGSDAAK QIVDKHVRTM  540
WTELSHLNKT RKPTKKTAAT APSPRASASV PLQPEVAPTV RNSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229498.11e-133PREDICTED: uncharacterized protein LOC100826282
TrEMBLA0A0Q3GI110.0A0A0Q3GI11_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G10750.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26391018
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-23FAR1-related sequence 5